Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC9A ENSBTAG00000009537

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Description

C-type lectin domain containing 9A [Source:VGNC Symbol;Acc:VGNC:58367]

Location

Primary_assembly 5: 99,886,583-99,900,926 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000126461.1	CLEC9A-202	2003	283aa	ENSBTAP00000087857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SX48	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000012546.7	CLEC9A-201	1900	241aa	ENSBTAP00000012546.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BKB0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000078371.3	CLEC9A-203	1628	192aa	ENSBTAP00000068683.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NBI6	-

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Summary

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