Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: CASD1 ENSBTAG00000009109

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Description

CAS1 domain containing 1 [Source:VGNC Symbol;Acc:VGNC:26775]

Location

Primary_assembly 4: 11,886,874-11,941,071 forward strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 5 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000072123.3	CASD1-201	4275	967aa	ENSBTAP00000067453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MB17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000012005.8	CASD1-202	4194	940aa	ENSBTAP00000012005.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MBE8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000074342.3	CASD1-204	4070	904aa	ENSBTAP00000070669.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MHF1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000070226.3	CASD1-203	3957	861aa	ENSBTAP00000074365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MQQ4	-
ENSBTAT00000102397.2	CASD1-205	3506	766aa	ENSBTAP00000088685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STK8	-

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Summary

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