Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FUBP1 ENSBTAG00000008926

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Description

far upstream element binding protein 1 [Source:VGNC Symbol;Acc:VGNC:55193]

Location

Primary_assembly 3: 66,707,435-66,741,765 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 9 transcripts (splice variants), 179 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000011751.8	FUBP1-207	2472	687aa	ENSBTAP00000011751.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DMH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000139917.1	FUBP1-203	6819	664aa	ENSBTAP00000105395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000143721.1	FUBP1-204	6759	644aa	ENSBTAP00000105057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099520.2	FUBP1-205	5030	643aa	ENSBTAP00000084617.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SL33	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000131177.2	FUBP1-206	4994	631aa	ENSBTAP00000074694.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RUF0	-
ENSBTAT00000074091.3	FUBP1-209	4742	582aa	ENSBTAP00000069862.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MKT5	-
ENSBTAT00000132151.2	FUBP1-208	2484	665aa	ENSBTAP00000086303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLZ7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000085173.3	FUBP1-202	2077	655aa	ENSBTAP00000057696.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LM31	-
ENSBTAT00000086565.3	FUBP1-201	1968	596aa	ENSBTAP00000069449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M6S0	-

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Summary

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