Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN3 ENSBTAG00000008868

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Description

calpain 3 [Source:VGNC Symbol;Acc:VGNC:26747]

Location

Primary_assembly 10: 37,711,299-37,767,445 forward strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 4 transcripts (splice variants), 281 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000011677.6	CAPN3-201	3380	822aa	ENSBTAP00000011677.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6QP82	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000075278.2	CAPN3-202	3233	773aa	ENSBTAP00000067036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDV5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000108558.1	CAPN3-203	3101	729aa	ENSBTAP00000094280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T8J4	-
ENSBTAT00000011680.5	CAPN3-204	2805	709aa	ENSBTAP00000011680.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MYC8	-

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Summary

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