Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
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Phenotypes
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ID History
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Gene: NUP98 ENSBTAG00000008432

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Description

nucleoporin 98 and 96 [Source:VGNC Symbol;Acc:VGNC:32367]

Location

Primary_assembly 15: 51,264,869-51,351,803 forward strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 3 transcripts (splice variants) and 224 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000011092.8	NUP98-201	6767	1799aa	ENSBTAP00000011092.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BCV4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000096130.2	NUP98-202	6626	1752aa	ENSBTAP00000088269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVP8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113825.2	NUP98-203	6545	1725aa	ENSBTAP00000090073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0L7	-

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Summary

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