Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: BDNF ENSBTAG00000008134

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Description

brain derived neurotrophic factor [Source:VGNC Symbol;Acc:VGNC:26461]

Location

Primary_assembly 15: 58,382,614-58,446,731 reverse strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 6 transcripts (splice variants), 199 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000124392.1	BDNF-206	1529	296aa	ENSBTAP00000092419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T3R4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000122659.1	BDNF-201	4613	250aa	ENSBTAP00000077269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95106	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000124916.1	BDNF-202	3961	250aa	ENSBTAP00000078080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95106	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000120477.1	BDNF-203	1995	264aa	ENSBTAP00000085624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SHE4	-
ENSBTAT00000123593.1	BDNF-204	1532	258aa	ENSBTAP00000091690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T573	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000010694.7	BDNF-205	1410	250aa	ENSBTAP00000010694.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95106	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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