Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CALCOCO2 ENSBTAG00000007935

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Description

calcium binding and coiled-coil domain 2 [Source:VGNC Symbol;Acc:VGNC:26703]

Location

Primary_assembly 19: 37,677,653-37,703,676 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000010432.6	CALCOCO2-203	2524	543aa	ENSBTAP00000010432.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DI74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000106037.1	CALCOCO2-204	2531	490aa	ENSBTAP00000101914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TWS0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113380.1	CALCOCO2-202	2089	408aa	ENSBTAP00000098895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TR29	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000105287.1	CALCOCO2-201	1571	408aa	ENSBTAP00000081128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S5A8	-

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Summary

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