Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC38A6 ENSBTAG00000007931

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Description

solute carrier family 38 member 6 [Source:VGNC Symbol;Acc:VGNC:34853]

Location

Primary_assembly 10: 73,121,581-73,196,440 forward strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 5 transcripts (splice variants), 210 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000069837.3	SLC38A6-202	2918	456aa	ENSBTAP00000064161.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N3L7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000010428.7	SLC38A6-205	3093	455aa	ENSBTAP00000010428.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BND4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122142.2	SLC38A6-201	2994	422aa	ENSBTAP00000085988.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SPX1	-
ENSBTAT00000101169.2	SLC38A6-203	2825	425aa	ENSBTAP00000100469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TV60	-
ENSBTAT00000084479.3	SLC38A6-204	1366	437aa	ENSBTAP00000071228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MNR2	-

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Summary

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