Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: MSH3 ENSBTAG00000007684

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Description

mutS homolog 3 [Source:VGNC Symbol;Acc:VGNC:31694]

Location

Primary_assembly 7: 80,749,007-80,953,175 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 5 transcripts (splice variants), 204 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000087378.3	MSH3-201	4762	1118aa	ENSBTAP00000071417.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NHH2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000123641.2	MSH3-205	4824	1103aa	ENSBTAP00000093697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T9Z7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000010107.8	MSH3-202	4645	1079aa	ENSBTAP00000010107.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MLH1	-
ENSBTAT00000119972.2	MSH3-203	4567	1053aa	ENSBTAP00000092549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T193	-
ENSBTAT00000094894.2	MSH3-204	4534	1042aa	ENSBTAP00000077745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYQ0	-

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Summary

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