Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: SPEF2 ENSBTAG00000023529

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Description

sperm flagellar 2 [Source:VGNC Symbol;Acc:VGNC:35202]

Location

Primary_assembly 20: 38,369,475-38,572,090 reverse strand.

ARS-UCD2.0:CM008187.2

About this gene

This gene has 5 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000088632.1	SPEF2-205	6423	2110aa	ENSBTAP00000090801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T2E1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000075239.1	SPEF2-201	5413	1713aa	ENSBTAP00000071967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V9VJQ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000009967.7	SPEF2-202	5383	1703aa	ENSBTAP00000009967.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MUD3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000067932.1	SPEF2-203	5338	1688aa	ENSBTAP00000064007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V9VGN8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000079607.2	SPEF2-204	5128	1618aa	ENSBTAP00000058220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LHJ4	-

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Summary

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