Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: STX4 ENSBTAG00000007523

.

Description

syntaxin 4 [Source:VGNC Symbol;Acc:VGNC:35440]

Location

Primary_assembly 25: 27,156,512-27,165,437 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 5 transcripts (splice variants), 191 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000070873.3	STX4-205	1346	348aa	ENSBTAP00000063565.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LT08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000116155.2	STX4-203	1483	284aa	ENSBTAP00000090599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVT2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135944.2	STX4-202	1362	275aa	ENSBTAP00000078291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RXP4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000009899.8	STX4-201	1276	298aa	ENSBTAP00000009899.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIB2	-
ENSBTAT00000117896.1	STX4-204	963	296aa	ENSBTAP00000078533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S5J1	-

.

Summary

.

.