Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SEMA6C ENSBTAG00000007281

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Description

semaphorin 6C [Source:VGNC Symbol;Acc:VGNC:34443]

Location

Primary_assembly 3: 19,673,478-19,687,263 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 5 transcripts (splice variants), 268 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000009575.6	SEMA6C-202	4061	956aa	ENSBTAP00000009575.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BG65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000070067.2	SEMA6C-201	4187	924aa	ENSBTAP00000072555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MLI0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000082115.2	SEMA6C-203	4058	893aa	ENSBTAP00000058390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LHT4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000149513.1	SEMA6C-205	3800	880aa	ENSBTAP00000104578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000084524.2	SEMA6C-204	3792	875aa	ENSBTAP00000070858.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MHZ5	-

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Summary

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