Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TMEM143 ENSBTAG00000007107

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Description

transmembrane protein 143 [Source:VGNC Symbol;Acc:VGNC:35975]

Location

Primary_assembly 18: 55,044,416-55,064,614 reverse strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 3 transcripts (splice variants), 117 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000009350.7	TMEM143-201	2240	472aa	ENSBTAP00000009350.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YQH9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000129787.1	TMEM143-202	2135	437aa	ENSBTAP00000103175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TX08	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000073037.3	TMEM143-203	1940	372aa	ENSBTAP00000071321.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MNW2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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