Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNCRIP ENSBTAG00000006672

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Description

synaptotagmin binding cytoplasmic RNA interacting protein [Source:VGNC Symbol;Acc:VGNC:35518]

Location

Primary_assembly 9: 63,819,466-63,845,636 forward strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 7 transcripts (splice variants), 283 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000086528.3	SYNCRIP-202	2385	606aa	ENSBTAP00000067867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M326	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000008774.8	SYNCRIP-203	3251	561aa	ENSBTAP00000008774.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MCT8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000143902.1	SYNCRIP-205	3227	562aa	ENSBTAP00000107127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000120946.2	SYNCRIP-206	3113	524aa	ENSBTAP00000101314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TRU9	-
ENSBTAT00000123564.2	SYNCRIP-207	2936	465aa	ENSBTAP00000089474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYW9	-
ENSBTAT00000145442.1	SYNCRIP-204	2695	525aa	ENSBTAP00000107140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000131868.2	SYNCRIP-201	1578	337aa	ENSBTAP00000089140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0G8	-

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Summary

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