Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX9 ENSBTAG00000006323

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Description

sorting nexin 9 [Source:VGNC Symbol;Acc:VGNC:35115]

Location

Primary_assembly 9: 94,424,879-94,514,720 forward strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 4 transcripts (splice variants), 252 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000008296.8	SNX9-201	3781	624aa	ENSBTAP00000008296.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6W6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000067628.3	SNX9-202	3688	593aa	ENSBTAP00000064173.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUG5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000066150.3	SNX9-204	3588	593aa	ENSBTAP00000054847.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MZ54	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000075350.2	SNX9-203	3101	497aa	ENSBTAP00000070723.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NG34	-

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Summary

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