Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLF1 ENSBTAG00000006107

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Description

SMC5-SMC6 complex localization factor 1 [Source:VGNC Symbol;Acc:VGNC:52883]

Location

Primary_assembly 7: 93,942,065-94,018,468 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 4 transcripts (splice variants), 192 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000091395.1	SLF1-201	4203	1175aa	ENSBTAP00000099971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TTV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000131380.1	SLF1-202	3741	1081aa	ENSBTAP00000087634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SWM1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000008026.7	SLF1-203	3738	1080aa	ENSBTAP00000008026.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YPK3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000105718.1	SLF1-204	3540	1014aa	ENSBTAP00000081827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S965	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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