Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP34 ENSBTAG00000006027

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Description

ubiquitin specific peptidase 34 [Source:VGNC Symbol;Acc:VGNC:36724]

Location

Primary_assembly 11: 59,859,970-60,101,736 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 188 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000064054.3	USP34-202	11844	3547aa	ENSBTAP00000054787.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MYZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000007921.7	USP34-204	11832	3543aa	ENSBTAP00000007921.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N0A8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000076229.2	USP34-203	11808	3535aa	ENSBTAP00000069109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIV0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000078346.2	USP34-201	11470	3464aa	ENSBTAP00000068642.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDV7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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