Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Phenotypes
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ID History
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Gene: VTA1 ENSBTAG00000005851

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Description

vesicle trafficking 1 [Source:VGNC Symbol;Acc:VGNC:36847]

Location

Primary_assembly 9: 79,629,610-79,700,094 forward strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 3 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000119548.2	VTA1-202	4869	299aa	ENSBTAP00000076759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S3S6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000007693.7	VTA1-203	1777	248aa	ENSBTAP00000007693.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N318	-
ENSBTAT00000069828.2	VTA1-201	895	279aa	ENSBTAP00000063101.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0D7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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