Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: CLN6 ENSBTAG00000005565

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Description

CLN6 transmembrane ER protein [Source:VGNC Symbol;Acc:VGNC:27453]

Location

Primary_assembly 10: 15,051,437-15,067,816 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 7 transcripts (splice variants) and 191 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000107273.1	CLN6-205	2026	372aa	ENSBTAP00000102853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZ83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000088182.1	CLN6-202	1927	339aa	ENSBTAP00000085709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SK74	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000007315.6	CLN6-206	1927	339aa	ENSBTAP00000007315.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BMT3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000096488.1	CLN6-201	1810	286aa	ENSBTAP00000101682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TYD0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000119964.1	CLN6-207	1639	243aa	ENSBTAP00000077594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S2S4	-
ENSBTAT00000105928.2	CLN6-204	1540	344aa	ENSBTAP00000103824.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U1S8	-
ENSBTAT00000098921.1	CLN6-203	1185	158aa	ENSBTAP00000089386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYP8	-

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Summary

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