Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: POLR2J ENSBTAG00000005446

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Description

RNA polymerase II subunit J [Source:NCBI gene (formerly Entrezgene);Acc:540428]

Gene Synonyms

POLR2J2

Location

Primary_assembly 25: 34,570,462-34,582,073 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 4 transcripts (splice variants), 34 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000086602.3	POLR2J-202	846	248aa	ENSBTAP00000060312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099783.2	POLR2J-203	1535	144aa	ENSBTAP00000101439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TXQ9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000108698.2	POLR2J-201	850	140aa	ENSBTAP00000096398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCK0	-
ENSBTAT00000007165.7	POLR2J-204	688	110aa	ENSBTAP00000007165.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YNU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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