Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: JADE3 ENSBTAG00000005124

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Description

jade family PHD finger 3 [Source:VGNC Symbol;Acc:VGNC:30360]

Location

Primary_assembly X: 85,297,757-85,436,598 forward strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 3 transcripts (splice variants), 206 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000006752.4	JADE3-201	4872	849aa	ENSBTAP00000006752.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3X6H5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000109718.2	JADE3-203	4764	823aa	ENSBTAP00000075433.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RTV3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000082812.2	JADE3-202	4716	830aa	ENSBTAP00000056766.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LJW2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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