Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TOM1L2 ENSBTAG00000003983

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Description

target of myb1 like 2 membrane trafficking protein [Source:VGNC Symbol;Acc:VGNC:36219]

Location

Primary_assembly 19: 34,556,868-34,628,408 forward strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 8 transcripts (splice variants), 292 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000076384.3	TOM1L2-207	4752	695aa	ENSBTAP00000063956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N3D0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000118885.2	TOM1L2-205	4968	571aa	ENSBTAP00000083096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SAI1	-
ENSBTAT00000125414.2	TOM1L2-206	4920	559aa	ENSBTAP00000078075.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZJ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000118029.2	TOM1L2-203	4906	551aa	ENSBTAP00000077202.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RXG2	-
ENSBTAT00000005206.8	TOM1L2-208	4900	553aa	ENSBTAP00000005206.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6R0C0	-
ENSBTAT00000099395.2	TOM1L2-201	4664	454aa	ENSBTAP00000077670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S665	-
ENSBTAT00000087117.3	TOM1L2-202	2373	596aa	ENSBTAP00000072530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MMW1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000005210.8	TOM1L2-204	2284	574aa	ENSBTAP00000005210.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BEE0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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