Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: STX16 ENSBTAG00000003872

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Description

syntaxin 16 [Source:VGNC Symbol;Acc:VGNC:110067]

Location

Primary_assembly 13: 57,696,574-57,720,274 reverse strand.

ARS-UCD2.0:CM008180.2

About this gene

This gene has 4 transcripts (splice variants), 197 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000106948.1	STX16-202	2181	326aa	ENSBTAP00000102067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103193.1	STX16-201	2169	322aa	ENSBTAP00000095385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T9K5	-
ENSBTAT00000118884.1	STX16-203	2118	305aa	ENSBTAP00000089678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T1Z9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000005055.6	STX16-204	1178	304aa	ENSBTAP00000005055.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BIQ3	-

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Summary

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