Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: GRAMD1A ENSBTAG00000003820

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Description

GRAM domain containing 1A [Source:VGNC Symbol;Acc:VGNC:29622]

Location

Primary_assembly 18: 45,742,720-45,767,893 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 4 transcripts (splice variants), 187 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004977.6	GRAMD1A-201	2980	808aa	ENSBTAP00000004977.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6QVR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000071456.3	GRAMD1A-202	3287	720aa	ENSBTAP00000068760.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M539	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000099607.2	GRAMD1A-203	3266	713aa	ENSBTAP00000102476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TVV8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000099345.2	GRAMD1A-204	2807	751aa	ENSBTAP00000094583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCJ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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