Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CNOT2 ENSBTAG00000003748

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Description

CCR4-NOT transcription complex subunit 2 [Source:VGNC Symbol;Acc:VGNC:27517]

Location

Primary_assembly 5: 43,134,292-43,266,502 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 4 transcripts (splice variants), 268 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000071934.2	CNOT2-202	2746	550aa	ENSBTAP00000063562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5L7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000085100.2	CNOT2-201	2857	531aa	ENSBTAP00000058313.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LN07	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000004880.7	CNOT2-204	2761	499aa	ENSBTAP00000004880.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BCE7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000057053.4	CNOT2-203	2335	413aa	ENSBTAP00000049597.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MID5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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