Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: KDM6A ENSBTAG00000003740

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Description

lysine demethylase 6A [Source:VGNC Symbol;Acc:VGNC:56924]

Location

Primary_assembly X: 98,634,552-98,813,696 reverse strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 7 transcripts (splice variants), 211 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000063826.2	KDM6A-202	5503	1453aa	ENSBTAP00000056061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N2E9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000071346.2	KDM6A-203	5368	1408aa	ENSBTAP00000062678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LR14	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000127934.1	KDM6A-204	5347	1401aa	ENSBTAP00000080750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SEC7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000004874.8	KDM6A-205	5266	1374aa	ENSBTAP00000004874.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MV76	-
ENSBTAT00000126596.1	KDM6A-206	5212	1356aa	ENSBTAP00000103969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U1J0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000128746.1	KDM6A-207	5209	1355aa	ENSBTAP00000083468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SHU0	-
ENSBTAT00000069866.2	KDM6A-201	5186	1348aa	ENSBTAP00000058096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LHB0	-

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Summary

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