Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TPD52L1 ENSBTAG00000003336

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Description

TPD52 like 1 [Source:VGNC Symbol;Acc:VGNC:36245]

Location

Primary_assembly 9: 25,985,368-26,078,941 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 6 transcripts (splice variants), 200 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081549.2	TPD52L1-203	1164	224aa	ENSBTAP00000062465.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYV4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000107588.1	TPD52L1-201	1740	131aa	ENSBTAP00000096597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TI57	-
ENSBTAT00000134228.1	TPD52L1-204	1459	209aa	ENSBTAP00000090856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0VBY4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000004332.6	TPD52L1-205	1444	204aa	ENSBTAP00000004332.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6Q4U5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000098919.1	TPD52L1-206	1405	191aa	ENSBTAP00000092956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T557	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000100348.1	TPD52L1-202	1387	144aa	ENSBTAP00000103006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U095	-

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Summary

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