Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: AVL9 ENSBTAG00000003114

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Description

AVL9 cell migration associated [Source:VGNC Symbol;Acc:VGNC:26355]

Location

Primary_assembly 4: 63,946,650-64,010,264 reverse strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 5 transcripts (splice variants) and 207 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000105642.1	AVL9-203	3141	646aa	ENSBTAP00000091728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T1V8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000095159.1	AVL9-205	3166	633aa	ENSBTAP00000080807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SA63	-
ENSBTAT00000108591.1	AVL9-204	3087	628aa	ENSBTAP00000094736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TD12	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000107490.1	AVL9-201	3048	615aa	ENSBTAP00000082899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SBY8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000004049.6	AVL9-202	2155	598aa	ENSBTAP00000004049.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N025	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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