Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SALL4 ENSBTAG00000003101

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Description

spalt like transcription factor 4 [Source:VGNC Symbol;Acc:VGNC:34265]

Location

Primary_assembly 13: 79,567,590-79,583,684 reverse strand.

ARS-UCD2.0:CM008180.2

About this gene

This gene has 4 transcripts (splice variants), 207 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104792.1	SALL4-202	3580	1095aa	ENSBTAP00000080821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S6K0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000004035.7	SALL4-203	3579	1061aa	ENSBTAP00000004035.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJZ5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000092148.1	SALL4-204	3194	998aa	ENSBTAP00000097029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TL65	-
ENSBTAT00000129763.1	SALL4-201	1025	276aa	ENSBTAP00000089844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SWZ7	-

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Summary

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