Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNJ1 ENSBTAG00000003063

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Description

synaptojanin 1 [Source:VGNC Symbol;Acc:VGNC:35527]

Location

Primary_assembly 1: 2,827,223-2,918,731 forward strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 4 transcripts (splice variants), 217 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000069919.3	SYNJ1-201	7413	1708aa	ENSBTAP00000074110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000074850.3	SYNJ1-202	6909	1578aa	ENSBTAP00000057627.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LLX8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000003984.7	SYNJ1-203	6776	1500aa	ENSBTAP00000003984.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MSN5 E1BD68	-
ENSBTAT00000003985.8	SYNJ1-204	4660	1300aa	ENSBTAP00000003985.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MC12	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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