Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: TNFSF4 ENSBTAG00000002894

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Description

TNF superfamily member 4 [Source:VGNC Symbol;Acc:VGNC:36176]

Location

Primary_assembly 16: 40,817,664-40,858,767 reverse strand.

ARS-UCD2.0:CM008183.2

About this gene

This gene has 2 transcripts (splice variants) and 95 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000003763.6	TNFSF4-202	1123	184aa	ENSBTAP00000003763.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DLJ5 E1BGY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000101773.1	TNFSF4-201	1629	142aa	ENSBTAP00000092055.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T5Q3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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