Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PPFIA4 ENSBTAG00000015885

.

Description

PTPRF interacting protein alpha 4 [Source:VGNC Symbol;Acc:VGNC:33192]

Location

Primary_assembly 16: 738,842-791,272 forward strand.

ARS-UCD2.0:CM008183.2

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000074104.3	PPFIA4-204	5611	1225aa	ENSBTAP00000060455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LT26	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000076925.3	PPFIA4-201	6063	1207aa	ENSBTAP00000061975.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LWY9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000003689.8	PPFIA4-202	6027	1195aa	ENSBTAP00000003689.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5E533	-
ENSBTAT00000075872.3	PPFIA4-203	6021	1193aa	ENSBTAP00000062236.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQ22	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

.

Summary

.

.