Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN10 ENSBTAG00000002809

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Description

calpain 10 [Source:VGNC Symbol;Acc:VGNC:26741]

Location

Primary_assembly 3: 119,972,737-119,984,768 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 6 transcripts (splice variants), 200 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000094314.1	CAPN10-203	3305	698aa	ENSBTAP00000086158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SSZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000098500.1	CAPN10-201	2416	649aa	ENSBTAP00000076364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYZ6	-
ENSBTAT00000108901.1	CAPN10-202	2266	654aa	ENSBTAP00000088061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SXM9	-
ENSBTAT00000003637.7	CAPN10-205	2238	626aa	ENSBTAP00000003637.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MBN8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000090953.1	CAPN10-204	2110	492aa	ENSBTAP00000080385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SDH6	-
ENSBTAT00000114065.1	CAPN10-206	703	133aa	ENSBTAP00000097262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TK12	-

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Summary

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