Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TTC39A ENSBTAG00000002451

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Description

tetratricopeptide repeat domain 39A [Source:VGNC Symbol;Acc:VGNC:36475]

Location

Primary_assembly 3: 94,953,193-95,004,229 forward strand.

ARS-UCD2.0:CM008170.2

About this gene

This gene has 6 transcripts (splice variants), 205 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000003183.8	TTC39A-203	3163	672aa	ENSBTAP00000003183.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000109265.2	TTC39A-201	2980	546aa	ENSBTAP00000087278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVR9	-
ENSBTAT00000119923.2	TTC39A-204	2842	530aa	ENSBTAP00000076489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RVV9	-
ENSBTAT00000127521.2	TTC39A-205	2783	571aa	ENSBTAP00000082793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SBM3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000096866.2	TTC39A-206	2771	567aa	ENSBTAP00000077314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S579	-
ENSBTAT00000071792.3	TTC39A-202	2707	581aa	ENSBTAP00000074271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NNC9	-

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Summary

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