Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: STX1A ENSBTAG00000017075

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Description

syntaxin 1A [Source:VGNC Symbol;Acc:VGNC:35436]

Location

Primary_assembly 25: 33,543,217-33,561,031 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 5 transcripts (splice variants), 200 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084274.3	STX1A-202	2701	429aa	ENSBTAP00000064870.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF7A939	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000105263.2	STX1A-205	2794	424aa	ENSBTAP00000096171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TIV6	-
ENSBTAT00000003031.7	STX1A-204	2357	345aa	ENSBTAP00000003031.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3X6B7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000110736.2	STX1A-201	1300	354aa	ENSBTAP00000101663.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TTI0	-
ENSBTAT00000067038.2	STX1A-203	1076	311aa	ENSBTAP00000060374.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXU8	-

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Summary

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