Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PUF60 ENSBTAG00000037493

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Description

poly(U) binding splicing factor 60 [Source:VGNC Symbol;Acc:VGNC:53878]

Location

Primary_assembly 14: 973,616-986,050 forward strand.

ARS-UCD2.0:CM008181.2

About this gene

This gene has 5 transcripts (splice variants), 261 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000083417.2	PUF60-201	2035	562aa	ENSBTAP00000061124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LML6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000144288.1	PUF60-204	4911	516aa	ENSBTAP00000104418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000077344.3	PUF60-203	4874	499aa	ENSBTAP00000057845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LGY1	-
ENSBTAT00000073909.2	PUF60-202	1939	530aa	ENSBTAP00000059475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LR62	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000002882.5	PUF60-205	1719	525aa	ENSBTAP00000002882.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N238	-

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Summary

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