Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SECISBP2 ENSBTAG00000001939

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Description

SECIS binding protein 2 [Source:VGNC Symbol;Acc:VGNC:34419]

Location

Primary_assembly 8: 88,754,736-88,789,458 reverse strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 4 transcripts (splice variants), 188 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000071393.2	SECISBP2-203	3624	881aa	ENSBTAP00000063334.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N285	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000124744.1	SECISBP2-201	3683	844aa	ENSBTAP00000094156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T5W9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000070951.2	SECISBP2-202	3400	804aa	ENSBTAP00000071819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MK37	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000002523.6	SECISBP2-204	3324	814aa	ENSBTAP00000002523.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BMA4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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