Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: RPAP1 ENSBTAG00000001693

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Description

RNA polymerase II associated protein 1 [Source:VGNC Symbol;Acc:VGNC:34098]

Location

Primary_assembly 10: 36,938,820-36,954,728 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 3 transcripts (splice variants) and 197 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081849.2	RPAP1-201	4649	1400aa	ENSBTAP00000071505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF7AML4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000110743.1	RPAP1-202	4532	1361aa	ENSBTAP00000085252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SQM9	-
ENSBTAT00000002220.6	RPAP1-203	4466	1339aa	ENSBTAP00000002220.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DHU8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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