Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TSKU ENSBTAG00000058190

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Description

tsukushi, small leucine rich proteoglycan [Source:NCBI gene (formerly Entrezgene);Acc:529661]

Location

Primary_assembly 15: 56,178,753-56,204,248 forward strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000097872.1	TSKU-203	21891	395aa	ENSBTAP00000080879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S4M0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000118276.1	TSKU-202	16217	358aa	ENSBTAP00000101696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S008	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000098692.1	TSKU-201	10913	358aa	ENSBTAP00000075400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S008	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000121411.1	TSKU-205	6650	358aa	ENSBTAP00000103723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S008	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000002011.6	TSKU-204	5057	358aa	ENSBTAP00000002011.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S008	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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