Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: HACE1 ENSBTAG00000001533

.

Description

HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:VGNC Symbol;Acc:VGNC:29739]

Location

Primary_assembly 9: 45,142,756-45,261,165 forward strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 6 transcripts (splice variants), 208 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000002010.7	HACE1-202	3735	936aa	ENSBTAP00000002010.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YIA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000072969.2	HACE1-201	3945	875aa	ENSBTAP00000071173.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAU8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000072412.2	HACE1-203	3625	879aa	ENSBTAP00000073740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NMC8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000085626.2	HACE1-206	3610	871aa	ENSBTAP00000073172.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MG09	-
ENSBTAT00000075225.2	HACE1-204	3583	865aa	ENSBTAP00000060574.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LLD9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000115877.1	HACE1-205	3070	694aa	ENSBTAP00000077353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S5B4	-

.

Summary

.

.