Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLCN5 ENSBTAG00000001507

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Description

chloride voltage-gated channel 5 [Source:VGNC Symbol;Acc:VGNC:27399]

Location

Primary_assembly X: 87,634,794-87,818,112 forward strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 3 transcripts (splice variants), 225 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000097192.2	CLCN5-203	9346	821aa	ENSBTAP00000077778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S256	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000001973.8	CLCN5-201	9525	816aa	ENSBTAP00000001973.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MN45	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000116832.2	CLCN5-202	9402	775aa	ENSBTAP00000093070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T2P5	-

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Summary

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