Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: MSH6 ENSBTAG00000001424

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Description

mutS homolog 6 [Source:VGNC Symbol;Acc:VGNC:31696]

Location

Primary_assembly 11: 30,105,964-30,143,452 forward strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 7 transcripts (splice variants), 202 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000096821.2	MSH6-205	4311	1378aa	ENSBTAP00000091935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SZP1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000110240.2	MSH6-201	4398	1290aa	ENSBTAP00000094392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TC26	-
ENSBTAT00000001867.7	MSH6-202	4369	1362aa	ENSBTAP00000001867.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B9Q4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000105002.2	MSH6-204	4269	1347aa	ENSBTAP00000092113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T6B7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122211.2	MSH6-207	4127	1291aa	ENSBTAP00000076492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S313	-
ENSBTAT00000148872.1	MSH6-203	3976	1231aa	ENSBTAP00000106948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000088560.2	MSH6-206	3775	1229aa	ENSBTAP00000102594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U0J2	-

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Summary

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