Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL27A1 ENSBTAG00000019807

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Description

collagen type XXVII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:56941]

Location

Primary_assembly 8: 103,383,664-103,537,042 forward strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 4 transcripts (splice variants), 139 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066476.2	COL27A1-202	7592	1841aa	ENSBTAP00000073467.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MT85	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000001200.7	COL27A1-201	7565	1839aa	ENSBTAP00000001200.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MTP1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000090417.1	COL27A1-203	7547	1826aa	ENSBTAP00000081490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S8B5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000081723.2	COL27A1-204	7532	1821aa	ENSBTAP00000063757.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M646	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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