Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM1 ENSBTAG00000000816

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Description

PR/SET domain 1 [Source:VGNC Symbol;Acc:VGNC:33288]

Location

Primary_assembly 9: 43,843,910-43,877,120 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000128904.1	PRDM1-205	5026	855aa	ENSBTAP00000088495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000110057.1	PRDM1-204	5234	854aa	ENSBTAP00000077073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S0B3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000086780.2	PRDM1-203	5123	828aa	ENSBTAP00000073571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NM21	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000001081.7	PRDM1-202	4966	842aa	ENSBTAP00000001081.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ30	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000105342.1	PRDM1-201	4721	694aa	ENSBTAP00000087213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SSW8	-

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Summary

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