Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP42 ENSBTAG00000000725

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Description

ubiquitin specific peptidase 42 [Source:VGNC Symbol;Acc:VGNC:50065]

Location

Primary_assembly 25: 38,091,953-38,130,241 forward strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 3 transcripts (splice variants), 237 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000099663.1	USP42-201	5119	1368aa	ENSBTAP00000082286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SIA9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000125227.1	USP42-203	4394	1325aa	ENSBTAP00000098489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQ35	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000000967.6	USP42-202	4268	1336aa	ENSBTAP00000000967.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DHT6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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