Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL11A2 ENSBTAG00000000601

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Description

collagen type XI alpha 2 chain [Source:VGNC Symbol;Acc:VGNC:27554]

Location

Primary_assembly 23: 7,349,322-7,379,693 reverse strand.

ARS-UCD2.0:CM008190.2

About this gene

This gene has 5 transcripts (splice variants), 196 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000000793.7	COL11A2-202	6537	1736aa	ENSBTAP00000000793.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MRP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000122125.1	COL11A2-201	6399	1710aa	ENSBTAP00000075315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZS5	-
ENSBTAT00000093929.1	COL11A2-203	6099	1650aa	ENSBTAP00000098425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TJC4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000104382.1	COL11A2-204	6092	1629aa	ENSBTAP00000102784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U0X2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000074325.2	COL11A2-205	1210	295aa	ENSBTAP00000069267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1ME56	-

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Summary

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