Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Phenotypes
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ID History
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Gene: VPS54 ENSBTAG00000000115

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Description

VPS54 subunit of GARP complex [Source:VGNC Symbol;Acc:VGNC:36830]

Location

Primary_assembly 11: 62,347,036-62,492,260 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 4 transcripts (splice variants) and 205 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084043.2	VPS54-204	3764	965aa	ENSBTAP00000069307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MFK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000000123.7	VPS54-203	3623	963aa	ENSBTAP00000000123.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DMF9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000104474.1	VPS54-202	3255	899aa	ENSBTAP00000076739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RWF2	-
ENSBTAT00000097015.1	VPS54-201	2980	815aa	ENSBTAP00000079285.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S2L7	-

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Summary

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