Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: VPS39 ENSBTAG00000032055

.

Description

VPS39 subunit of HOPS complex [Source:VGNC Symbol;Acc:VGNC:36822]

Location

Primary_assembly 10: 37,550,536-37,596,984 reverse strand.

ARS-UCD1.3:CM008177.2

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000006949.6	VPS39-201	3923	901aa	ENSBTAP00000006949.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BM41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000130804.1	VPS39-202	3483	853aa	ENSBTAP00000083744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000134859.1	VPS39-203	3432	830aa	ENSBTAP00000096140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000130873.1	VPS39-204	3247	874aa	ENSBTAP00000094979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Summary

.

.