Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNJ1 ENSBTAG00000003063

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Description

synaptojanin 1 [Source:VGNC Symbol;Acc:VGNC:35527]

Location

Primary_assembly 1: 2,827,223-2,917,600 forward strand.

ARS-UCD1.3:CM008168.2

About this gene

This gene has 5 transcripts (splice variants), 217 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000069919.2	SYNJ1-201	6282	1708aa	ENSBTAP00000074110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000003984.6	SYNJ1-204	5918	1529aa	ENSBTAP00000003984.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BD68	-
ENSBTAT00000074850.2	SYNJ1-202	5778	1578aa	ENSBTAP00000057627.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LLX8	-
ENSBTAT00000066488.2	SYNJ1-205	4856	1500aa	ENSBTAP00000057548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MSN5	-
ENSBTAT00000003985.7	SYNJ1-203	4226	1300aa	ENSBTAP00000003985.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MC12	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data