65 fish EPO-Extended
This alignment has been generated in Ensembl release 106 and is composed of 60,322 blocks (up to 940,299 bp long).
API access
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) | Coding exon length (bp) | Coding exon coverage (bp) | Coding exon coverage (%) |
|---|---|---|---|---|---|---|---|
| Zebrafish (Danio rerio) | GRCz11 | 1,373,471,384 | 333,550,089 | 24.29 | 42,031,845 | 9,003,455 | 21.42 |
| Common carp (Cyprinus carpio carpio) | Cypcar_WagV4.0 | 1,460,365,368 | 726,650,302 | 49.76 | 83,695,910 | 45,821,777 | 54.75 |
| Golden-line barbel (Sinocyclocheilus grahami) | SAMN03320097.WGS_v1.1 | 1,750,287,761 | 96,868,767 | 5.53 | 69,134,296 | 7,849,894 | 11.35 |
| Goldfish (Carassius auratus) | ASM336829v1 | 1,820,635,050 | 646,196,043 | 35.49 | 97,245,049 | 40,585,117 | 41.73 |
| Channel catfish (Ictalurus punctatus) | IpCoco_1.2 | 783,274,721 | 210,768,774 | 26.91 | 38,840,175 | 10,265,471 | 26.43 |
| Red-bellied piranha (Pygocentrus nattereri) | Pygocentrus_nattereri-1.0.2 | 1,285,352,492 | 37,578,370 | 2.92 | 42,361,266 | 20,291,779 | 47.90 |
| Mexican tetra (Astyanax mexicanus) | Astyanax_mexicanus-2.0 | 1,335,239,194 | 300,231,321 | 22.49 | 42,605,471 | 10,505,689 | 24.66 |
| Electric eel (Electrophorus electricus) | Ee_SOAP_WITH_SSPACE | 551,880,868 | 36,386,627 | 6.59 | 35,633,881 | 18,593,020 | 52.18 |
| Denticle herring (Denticeps clupeoides) | fDenClu1.1 | 567,401,054 | 179,430,625 | 31.62 | 41,411,314 | 11,919,212 | 28.78 |
| Atlantic herring (Clupea harengus) | Ch_v2.0.2 | 725,670,187 | 168,679,156 | 23.24 | 42,588,707 | 8,931,533 | 20.97 |
| Atlantic cod (Gadus morhua) | gadMor3.0 | 669,949,713 | 53,976,622 | 8.06 | 43,237,926 | 22,064,645 | 51.03 |
| Pinecone soldierfish (Myripristis murdjan) | fMyrMur1.1 | 835,254,674 | 471,440,446 | 56.44 | 39,636,610 | 22,610,257 | 57.04 |
| Tiger tail seahorse (Hippocampus comes) | H_comes_QL1_v1 | 493,775,940 | 64,762,534 | 13.12 | 31,719,350 | 20,642,319 | 65.08 |
| Ballan wrasse (Labrus bergylta) | BallGen_V1 | 805,480,521 | 123,637,598 | 15.35 | 40,487,195 | 23,705,641 | 58.55 |
| Lumpfish (Cyclopterus lumpus) | fCycLum1.pri | 572,885,595 | 221,282,807 | 38.63 | 36,193,391 | 13,939,667 | 38.51 |
| Stickleback (Gasterosteus aculeatus) | BROADS1 | 461,533,448 | 251,565,825 | 54.51 | 32,649,418 | 17,727,623 | 54.30 |
| Pike-perch (Sander lucioperca) | SLUC_FBN_1 | 900,477,767 | 139,985,377 | 15.55 | 40,902,852 | 24,756,510 | 60.53 |
| Channel bull blenny (Cottoperca gobio) | fCotGob3.1 | 609,391,784 | 429,591,193 | 70.50 | 37,075,790 | 25,731,473 | 69.40 |
| Gilthead seabream (Sparus aurata) | fSpaAur1.1 | 833,578,411 | 559,697,083 | 67.14 | 46,093,722 | 31,681,902 | 68.73 |
| European seabass (Dicentrarchus labrax) | dlabrax2021 | 695,892,153 | 408,238,351 | 58.66 | 43,802,109 | 23,920,813 | 54.61 |
| Large yellow croaker (Larimichthys crocea) | L_crocea_2.0 | 657,939,657 | 453,179,174 | 68.88 | 42,080,541 | 28,740,894 | 68.30 |
| Fugu (Takifugu rubripes) | fTakRub1.2 | 384,110,215 | 209,940,355 | 54.66 | 37,455,454 | 20,935,081 | 55.89 |
| Tetraodon (Tetraodon nigroviridis) | TETRAODON8 | 358,618,246 | 147,440,850 | 41.11 | 30,080,167 | 13,983,323 | 46.49 |
| Turbot (Scophthalmus maximus) | ASM1334776v1 | 556,696,898 | 372,035,152 | 66.83 | 39,569,397 | 26,349,250 | 66.59 |
| Tongue sole (Cynoglossus semilaevis) | Cse_v1.0 | 470,199,494 | 164,570,263 | 35.00 | 35,260,029 | 11,272,756 | 31.97 |
| Barramundi perch (Lates calcarifer) | ASB_HGAPassembly_v1 | 668,464,831 | 149,366,192 | 22.34 | 41,392,853 | 24,982,628 | 60.35 |
| Greater amberjack (Seriola dumerili) | Sdu_1.0 | 677,686,174 | 502,470,789 | 74.15 | 38,650,677 | 27,985,118 | 72.41 |
| Yellowtail amberjack (Seriola lalandi dorsalis) | Sedor1 | 732,509,836 | 146,908,473 | 20.06 | 38,170,013 | 24,736,293 | 64.81 |
| Climbing perch (Anabas testudineus) | fAnaTes1.2 | 555,641,398 | 133,187,102 | 23.97 | 41,390,858 | 25,635,974 | 61.94 |
| Siamese fighting fish (Betta splendens) | fBetSpl5.2 | 441,371,523 | 240,053,827 | 54.39 | 40,133,352 | 22,099,775 | 55.07 |
| Zig-zag eel (Mastacembelus armatus) | fMasArm1.2 | 591,951,587 | 132,915,300 | 22.45 | 39,800,582 | 25,394,789 | 63.81 |
| Chinese medaka (Oryzias sinensis) | ASM858656v1 | 813,986,518 | 453,276,486 | 55.69 | 33,987,082 | 23,700,920 | 69.74 |
| Japanese medaka HdrR (Oryzias latipes) | ASM223467v1 | 734,057,086 | 555,554,508 | 75.68 | 40,334,262 | 29,590,607 | 73.36 |
| Indian medaka (Oryzias melastigma) | Om_v0.7.RACA | 779,452,910 | 555,428,798 | 71.26 | 37,626,793 | 27,362,086 | 72.72 |
| Javanese ricefish (Oryzias javanicus) | OJAV_1.1 | 809,679,899 | 517,325,075 | 63.89 | 34,799,773 | 21,986,029 | 63.18 |
| Turquoise killifish (Nothobranchius furzeri) | Nfu_20140520 | 1,242,518,059 | 101,824,255 | 8.19 | 40,365,882 | 3,873,231 | 9.60 |
| Mangrove rivulus (Kryptolebias marmoratus) | ASM164957v1 | 680,366,784 | 135,377,833 | 19.90 | 36,335,182 | 24,586,085 | 67.66 |
| Sheepshead minnow (Cyprinodon variegatus) | C_variegatus-1.0 | 1,035,184,475 | 114,052,876 | 11.02 | 35,763,670 | 23,501,905 | 65.71 |
| Mummichog (Fundulus heteroclitus) | Fundulus_heteroclitus-3.0.2 | 1,021,898,560 | 119,945,717 | 11.74 | 35,837,024 | 23,515,753 | 65.62 |
| Platyfish (Xiphophorus maculatus) | X_maculatus-5.0-male | 704,321,165 | 573,885,193 | 81.48 | 39,808,847 | 31,946,200 | 80.25 |
| Guppy (Poecilia reticulata) | Guppy_female_1.0_MT | 731,622,281 | 568,702,229 | 77.73 | 36,750,983 | 28,847,877 | 78.50 |
| Amazon molly (Poecilia formosa) | PoeFor_5.1.2 | 748,923,461 | 122,255,761 | 16.32 | 40,804,723 | 25,365,106 | 62.16 |
| Sailfin molly (Poecilia latipinna) | P_latipinna-1.0 | 815,144,743 | 121,616,005 | 14.92 | 35,799,401 | 23,195,141 | 64.79 |
| Orange clownfish (Amphiprion percula) | Nemo_v1 | 908,939,294 | 585,237,319 | 64.39 | 38,226,868 | 24,499,400 | 64.09 |
| Clown anemonefish (Amphiprion ocellaris) | AmpOce1.0 | 880,720,895 | 148,279,554 | 16.84 | 37,759,709 | 24,590,081 | 65.12 |
| Spiny chromis (Acanthochromis polyacanthus) | ASM210954v1 | 991,584,656 | 149,640,036 | 15.09 | 37,181,158 | 24,358,955 | 65.51 |
| Bicolor damselfish (Stegastes partitus) | Stegastes_partitus-1.0.2 | 800,491,834 | 150,749,030 | 18.83 | 36,236,516 | 24,078,991 | 66.45 |
| Midas cichlid (Amphilophus citrinellus) | Midas_v5 | 844,902,565 | 142,474,258 | 16.86 | 34,548,519 | 22,281,977 | 64.49 |
| Nile tilapia (Oreochromis niloticus) | O_niloticus_UMD_NMBU | 1,005,681,550 | 644,249,172 | 64.06 | 51,713,280 | 36,677,782 | 70.93 |
| Lyretail cichlid (Neolamprologus brichardi) | NeoBri1.0 | 847,910,432 | 141,567,412 | 16.70 | 33,846,093 | 21,823,037 | 64.48 |
| Makobe Island cichlid (Pundamilia nyererei) | PunNye1.0 | 830,133,247 | 139,466,575 | 16.80 | 35,984,801 | 23,400,690 | 65.03 |
| Eastern happy (Astatotilapia calliptera) | fAstCal1.2 | 880,428,986 | 703,290,041 | 79.88 | 44,240,930 | 36,803,863 | 83.19 |
| Zebra mbuna (Maylandia zebra) | M_zebra_UMD2a | 957,485,262 | 680,304,763 | 71.05 | 42,396,503 | 33,035,519 | 77.92 |
| Burton's mouthbrooder (Haplochromis burtoni) | AstBur1.0 | 831,411,547 | 139,527,330 | 16.78 | 37,764,289 | 24,920,472 | 65.99 |
| Northern pike (Esox lucius) | Eluc_v4 | 940,906,975 | 282,222,185 | 29.99 | 46,699,206 | 14,891,282 | 31.89 |
| Coho salmon (Oncorhynchus kisutch) | Okis_V2 | 2,375,894,934 | 1,520,174,611 | 63.98 | 81,688,917 | 59,219,878 | 72.49 |
| Chinook salmon (Oncorhynchus tshawytscha) | Otsh_v1.0 | 2,425,713,975 | 1,361,539,467 | 56.13 | 69,528,357 | 47,819,692 | 68.78 |
| Rainbow trout (Oncorhynchus mykiss) | USDA_OmykA_1.1 | 2,341,671,972 | 1,589,988,762 | 67.90 | 91,850,918 | 68,304,339 | 74.36 |
| Brown trout (Salmo trutta) | fSalTru1.1 | 2,371,880,186 | 1,563,706,546 | 65.93 | 79,685,618 | 59,080,325 | 74.14 |
| Atlantic salmon (Salmo salar) | Ssal_v3.1 | 2,756,584,103 | 1,747,416,018 | 63.39 | 84,244,977 | 62,599,841 | 74.31 |
| Huchen (Hucho hucho) | ASM331708v1 | 2,487,549,814 | 63,638,209 | 2.56 | 70,924,295 | 21,948,550 | 30.95 |
| Asian bonytongue (Scleropages formosus) | fSclFor1.1 | 784,546,363 | 164,738,255 | 21.00 | 44,035,411 | 8,708,337 | 19.78 |
| Paramormyrops kingsleyae | PKINGS_0.1 | 799,421,083 | 34,037,595 | 4.26 | 40,780,485 | 19,421,695 | 47.62 |
| Spotted gar (Lepisosteus oculatus) | LepOcu1 | 945,878,036 | 174,319,985 | 18.43 | 31,448,193 | 6,098,610 | 19.39 |
| Reedfish (Erpetoichthys calabaricus) | fErpCal1.1 | 3,811,022,027 | 170,889,236 | 4.48 | 35,314,704 | 2,393,869 | 6.78 |
Block size distribution
| Size range | All 60,322 alignment blocks | |
|---|---|---|
| # blocks | Total size (incl. gaps) | |
| 10 bp - 100 bp | 2 |
155.0 bp |
| 100 bp - 1 kb | 214 |
102.8 kb |
| 1 kb - 10 kb | 854 |
4.4 Mb |
| 10 kb - 100 kb | 23,283 |
1.3 Gb |
| 100 kb - 1 Mb | 35,231 |
10.0 Gb |
| 1 Mb - 10 Mb | 738 |
738.0 Mb |